Berthier, S.: Irregular Heartwood Formation in Maritime Pine (Pinus pinaster
Ait): Consequences for Biomechanical and Hydraulic Tree Functioning, Ann. Bot.-London, 87, 19–25, https://doi.org/10.1006/anbo.2000.1290, 2001.
Bruns, T. D., Bidartondo, M. I., and Taylor, D. L.: Host specificity in
ectomycorrhizal communities: what do the exceptions tell us?, Integr. Comp.
Biol., 42, 352–359, https://doi.org/10.1093/icb/42.2.352, 2002.
Buscardo, E., Rodríguez-Echeverría, S., Martín, M. P., De
Angelis, P., Pereira, J. S., and Freitas, H.: Impact of wildfire return
interval on the ectomycorrhizal resistant propagules communities of a
Mediterranean open forest, Fungal Biol., 114, 628–636,
https://doi.org/10.1016/j.funbio.2010.05.004, 2010.
Buscardo, E., Freitas, H., Pereira, J. S., and de Angelis, P.: Common
environmental factors explain both ectomycorrhizal species diversity and
pine regeneration variability in a post-fire Mediterranean forest,
Mycorrhiza, 21, 549–558, https://doi.org/10.1007/s00572-011-0363-5, 2011.
Buscardo, E., Rodríguez-Echeverría, S., Barrico, L., García,
M. Á., Freitas, H., Martín, M. P., De Angelis, P., and Muller, L. A.
H.: Is the potential for the formation of common mycorrhizal networks
influenced byfire frequency?, Soil Biol. Biochem., 46, 136–144,
https://doi.org/10.1016/j.soilbio.2011.12.007, 2012.
Campelo, F., Vieira, J., Battipaglia, G., de Luis, M., Nabais, C., Freitas,
H., and Cherubini, P.: Which matters most for the formation of intra-annual
density fluctuations in Pinus pinaster: age or size?, Trees-Struct. Funct., 29, 237–245, https://doi.org/10.1007/s00468-014-1108-9, 2015.
Chao, A., Chazdon, R. L., and Shen, T. J.: A new statistical approach for
assessing similarity of species composition with incidence and abundance
data, Ecol. Lett., 8, 148–159, https://doi.org/10.1111/j.1461-0248.2004.00707.x,
2005.
Comandini, O., Contu, M., and Rinaldi, A. C.: An overview of Cistus
ectomycorrhizal fungi, Mycorrhiza, 16, 381–395,
https://doi.org/10.1007/s00572-006-0047-8, 2006.
Cox, F., Barsoum, N., Lilleskov, E. A., and Bidartondo, M. I.: Nitrogen
availability is a primary determinant of conifer mycorrhizas across complex
environmental gradients, Ecol. Lett., 13, 1103–1113,
https://doi.org/10.1111/j.1461-0248.2010.01494.x, 2010.
Dickie, I. A., Guza, R., and Krazewski, S.: Shared perennial ectomycorrhizal
fungi between a herbacious perennial (Helianthemum bicknellii) and oak
(Quercus) seedlings, New Phytol., 164, 375–382, available at:
http://onlinelibrary.wiley.com/doi/10.1111/j.1469-8137.2004.01177.x/full
(last access: 13 September 2017), 2004.
Dixon, P.: VEGAN, a package of R functions for community ecology, J. Veg.
Sci., 14, 927–930, https://doi.org/10.1111/j.1654-1103.2003.tb02228.x, 2003.
Epskamp, S., Cramer, A. O. J., Waldorp, L. J., Schmittmann, V. D., and
Borsboom, D.: qgraph?: Network Visualizations of Relationships in
Psychometric Data, J. Stat. Softw., 48, https://doi.org/10.18637/jss.v048.i04, 2012.
Gamito, S.: Caution is needed when applying Margalef diversity index, Ecol.
Indic., 10, 550–551, https://doi.org/10.1016/j.ecolind.2009.07.006, 2010.
Gardes, M. and Bruns, T. D.: ITS primers with enhanced specificity for
basidiomycetes, application to the identification of mycorrihiza and rusts,
Mol. Ecol., 2, 113–118, https://doi.org/10.1111/J.1365-294x.1993.Tb00005.X, 1993.
Guindon, S. and Gascuel, O.: A simple, fast, and accurate algorithm to
estimate large phylogenies by maximum likelihood, Syst. Biol., 52,
696–704, https://doi.org/10.1080/10635150390235520, 2003.
Horton, T. R., Cázares, E., and Bruns, T. D.: Ectomycorrhizal,
vesicular-arbuscular and dark septate fungal colonization of bishop pine
(Pinus muricata) seedlings in the first 5 months of growth after wildfire,
Mycorrhiza, 8, 11–18, https://doi.org/10.1007/s005720050205, 1998.
Ishida, T. A., Nara, K., and Hogetsu, T.: Host effects on ectomycorrhizal
fungal communities: Insight from eight host species in mixed
conifer-broadleaf forests, New Phytol., 174, 430–440,
https://doi.org/10.1111/j.1469-8137.2007.02016.x, 2007.
Itoo, Z. A. and Reshi, Z. A.: Effect of different nitrogen and carbon
sources and concentrations on the mycelial growth of ectomycorrhizal fungi
under in-vitro conditions, Scand. J. For. Res., 29, 619–628,
https://doi.org/10.1080/02827581.2014.964756, 2014.
Jarvis, S., Woodward, S., Alexander, I. J., and Taylor, A. F. S.: Regional
scale gradients of climate and nitrogen deposition drive variation in
ectomycorrhizal fungal communities associated with native Scots pine, Glob. Change. Biol., 19, 1688–1696, https://doi.org/10.1111/gcb.12178, 2013.
Kennedy, P. G., Izzo, A. D., and Bruns, T. D.: There is high potential for
the formation of common mycorrhizal networks between understorey and canopy
trees in a mixed evergreen forest, J. Ecol., 91, 1071–1080,
https://doi.org/10.1046/j.1365-2745.2003.00829.x, 2003.
Marchante, H., Marchante, E., and Freitas, H.: Invasion of the Portuguese
dune ecosystems by the exotic species Acacia longifolia (Andrews) Willd.:
effects at the community level, Plant invasions, Ecol. Threat. Manag. Solut.,
Backhuys Publ., Leiden, 75–85, 2003.
Marchante, H., Marchante, E., Freitas, H., and Hoffmann, J. H.: Temporal
changes in the impacts on plant communities of an invasive alien tree,
Acacia longifolia, Plant Ecol., 216, 1481–1498,
https://doi.org/10.1007/s11258-015-0530-4, 2015.
Menkis, A., Urbina, H., James, T. Y., and Rosling, A.: Archaeorhizomyces
borealis sp. nov. and a sequence-based classification of related soil fungal
species, Fungal Biol., 118, 943–955, https://doi.org/10.1016/j.funbio.2014.08.005,
2014.
Monteiro-Henriques, T., Martins, M. J., Cerdeira, J. O., Silva, P.,
Arsénio, P., Silva, Á., Bellu, A., and Costa, J. C.:
Bioclimatological mapping tackling uncertainty propagation:
application to
mainland Portugal, Int. J. Climatol., 36, 400–411, https://doi.org/10.1002/joc.4357,
2016.
Onnela, J. P., Saramäki, J., Kertész, J., and Kaski, K.: Intensity
and coherence of motifs in weighted complex networks, Phys. Rev. E. – Stat.
Nonlinear, Soft Matter Phys., 71, https://doi.org/10.1103/PhysRevE.71.065103, 2005.
Pestaña Nieto, M. and Santolamazza Carbone, S.: Characterization of
juvenile maritime pine (Pinus pinaster Ait.) ectomycorrhizal fungal
community using morphotyping, direct sequencing and fruitbodies sampling,
Mycorrhiza, 19, 91–98, https://doi.org/10.1007/s00572-008-0207-0, 2009.
Posada, D.: jModelTest: phylogenetic model averaging, Mol. Biol. Evol.,
25, 1253–1256, 2008.
Pringle, A., Bever, J. D., Gardes, M., Parrent, J. L., Rillig, M. C., and
Klironomos, J. N.: Mycorrhizal Symbioses and Plant Invasions, Annu. Rev.
Ecol. Evol. Syst., 40, 699–715,
https://doi.org/10.1146/annurev.ecolsys.39.110707.173454, 2009.
Rincón, A., Santamaría-Pérez, B., Rabasa, S. G., Coince, A.,
Marçais, B., and Buée, M.: Compartmentalized and contrasted response
of ectomycorrhizal and soil fungal communities of Scots pine forests along
elevation gradients in France and Spain, Environ. Microbiol., 17,
3009–3024, https://doi.org/10.1111/1462-2920.12894, 2015.
Rodríguez-Echeverría, S.: Rhizobial hitchhikers from Down Under:
Invasional meltdown in a plant-bacteria mutualism?, J. Biogeogr., 37,
1611–1622, https://doi.org/10.1111/j.1365-2699.2010.02284.x, 2010.
Rodríguez-Echeverría, S., Crisóstomo, J. A., Nabais, C., and
Freitas, H.: Belowground mutualists and the invasive ability of Acacia
longifolia in coastal dunes of Portugal, Biol. Invasions, 11, 651–661,
https://doi.org/10.1007/s10530-008-9280-8, 2009.
Sánchez, R., Serra, F., Tárraga, J., Medina, I., Carbonell, J.,
Pulido, L., de María, A., Capella-Gutíerrez, S., Huerta-Cepas, J., and Gabaldón, T.: Phylemon 2.0: a suite of web-tools for molecular
evolution, phylogenetics, phylogenomics and hypotheses testing, Nucleic
Acids Res., 39, W470–W474, 2011.
Seifert, K. A.: Progress towards DNA barcoding of fungi, Mol. Ecol. Resour.,
9, 83–89, https://doi.org/10.1111/j.1755-0998.2009.02635.x, 2009.
Taudiere, A., Munoz, F., Lesne, A., Monnet, A.-C., Bellanger, J.-M.,
Selosse, M.-A., Moreau, P.-A., and Richard, F.: Beyond ectomycorrhizal
bipartite networks: projected networks demonstrate contrasted patterns
between early- and late-successional plants in Corsica, Front. Plant Sci.,
6, 1–14, https://doi.org/10.3389/fpls.2015.00881, 2015.
Tedersoo, L. and Smith, M. E.: Lineages of ectomycorrhizal fungi revisited:
Foraging strategies and novel lineages revealed by sequences from
belowground, Fungal Biol. Rev., 27, 83–99,
https://doi.org/10.1016/j.fbr.2013.09.001, 2013.
Tedersoo, L., May, T. W., and Smith, M. E.: Ectomycorrhizal lifestyle in
fungi: Global diversity, distribution, and evolution of phylogenetic
lineages, Mycorrhiza, 20, 217–263, https://doi.org/10.1007/s00572-009-0274-x, 2010.
Vrålstad, T., Myhre, E., and Schumacher, T.: Molecular diversity and
phylogenetic affinities of symbiotic root-associated ascomycetes of the
Helotiales in burnt and metal polluted habitats, New Phytol., 155,
131–148, https://doi.org/10.1046/j.1469-8137.2002.00444.x, 2002.
Walbert, K., Ramsfield, T. D., Ridgway, H. J., and Jones, E. E.:
Ectomycorrhiza of Pinus radiata (D. Don 1836) in New Zealand – an above-and
below-ground assessment, Australas. Mycol., 29, 7–16, available at:
https://www.researchgate.net/publication/237091953_Ectomycorrhiza_of_Pinus_radiata_,
(last access: 13 September 2017), 2010.
White, T. J., Bruns, T., Lee, S., and Taylor, J.: Amplification and direct
sequencing of fungal ribossomal RNA gene for Phylogenetics – PCR Protocols,
PCR Protoc., 18, 315–322, https://doi.org/10.1016/B978-0-12-372180-8.50042-1, 1990.
Yu, G., Smith, D. K., Zhu, H., Guan, Y., and Lam, T. T. Y.: ggtree: an r
package for visualization and annotation of phylogenetic trees with their
covariates and other associated data, Methods Ecol. Evol., 8, 28–36,
https://doi.org/10.1111/2041-210X.12628, 2017.
Zhang, B. and Horvath, S.: A General Framework for Weighted Gene
Co-Expression Network Analysis, Stat. Appl. Genet. Mo. B., 4,
https://doi.org/10.2202/1544-6115.1128, 2005.
Zunzunegui, M., Díaz Barradas, M. C., Aguilar, F., Ain Lhout, F.,
Clavijo, A., and García Novo, F.: Growth response of Halimium
halimifolium at four sites with different soil water availability regimes in
two contrasted hydrological cycles, Plant Soil, 247, 271–281,
https://doi.org/10.1023/A:1021598112037, 2002.